Optimization of steady-state ¹³C-labeling experiments for metabolic flux analysis.

Kruger NJ, Masakapalli SK, Ratcliffe RG

While steady-state (13)C metabolic flux analysis is a powerful method for deducing multiple fluxes in the central metabolic network of heterotrophic and mixotrophic plant tissues, it is also time-consuming and technically challenging. Key steps in the design and interpretation of steady-state (13)C labeling experiments are illustrated with a generic protocol based on applications to plant cell suspension cultures.

Keywords:

Algorithms

,

Arabidopsis

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Carbohydrate Metabolism

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Carbon Isotopes

,

Cell Culture Techniques

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Cells, Cultured

,

Computer Simulation

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Kinetics

,

Metabolic Flux Analysis

,

Metabolic Networks and Pathways

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Models, Biological

,

Monte Carlo Method

,

Plant Cells

,

Staining and Labeling